Installation¶
This protocol leverages the work of Bioconda and depends on conda
.
For complete setup of these, please see:
https://bioconda.github.io/#using-bioconda
Really, you just need to make sure conda
is executable and you’ve
set up your channels (steps 1 and 2). Then:
conda install python>=3.6 click \
pyyaml snakemake>=5.1.4 biopython
pip install hundo
To update to the newest version of Hundo, run
pip install --upgrade hundo
Alternatively, if you do not want any new executables in your environment you can install into a new conda environment, e.g. hundo_env:
conda create --name hundo_env python=3 click pyyaml snakemake biopython
conda activate hundo_env
pip install hundo
To leave the environment:
conda deactivate